Peer-reviewed Journal Articles

  1. Subramanian A and Schwartz R. Reference-free inference of tumor phylogenies from single-cell sequencing data. BMC Genomics. 2015;16 Suppl 11:S7. Pubmed
  2. Subramanian A, Shackney S, Schwartz R. Novel multi-sample scheme for inferring phylogenetic markers from whole genome tumor profiles. IEEE/ACM Trans Comput Biol Bioinform. 2013 Apr 23. Pubmed
  3. Subramanian A, Shackney S, Schwartz R. Inference of tumor phylogenies from genomic assays on heterogeneous samples. J Biomed Biotechnol. 2012; 2012:797812. Pubmed
  4. Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R. Robust unmixing of tumor states in array comparative genomic hybridization data. Bioinformatics. 2010 Jun 15; 26(12): i106-14. Pubmed
  5. Adithi M, Kandalam M, Ramkumar HL, Subramanian A, Venkatesan N, Krishnakumar S. Retinoblastoma: expression of HLA-G. Ocul Immunol Inflamm. 2006 Aug; 14(4): 207-13. Pubmed

Peer-reviewed Conference Papers

  1. Subramanian A, Shackney S, Schwartz R. Novel multi-sample scheme for inferring phylogenetic markers from whole genome tumor profiles. Proceedings of the 8th International Symposium on Bioinformatics Research and Applications (ISBRA) 2012, Dallas, TX, USA, May 21-23, 2012. Bioinformatics Research and Applications. Lecture Notes in Computer Science Volume 7292, 2012, pp 250-262. (Oral Presentation).
  2. Subramanian A, Shackney S, Schwartz R. Inference of tumor phylogenies from genomic assays on heterogeneous samples. BCB ‘11 Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB) 2011. Pages 172-181. (Oral Presentation).
  3. Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R. Robust unmixing of tumor states in array comparative genomic hybridization data. Intelligent Systems for Molecular biology (ISMB) 2010. (Oral Presentation).

Book Chapter

  1. Subramanian A, Shackney S, Schwartz R. “Tumor phylogenetics in the Next Generation Sequencing era: Strategies and Challenges”. Applications of Next Generation Sequencing in Cancer Research. 2013.